If you for whatever reason don't want/can't use cookies, access SMART through this page. Limit options are available immediately after the Search button, which follows this note. Information about your selected mode is stored in a browser cookie. Enter your search terms Search button Note: You may want to limit your search before running it. Normal modeĬlick on the images above to select your default mode. Different color schemes are used to easily identify the mode you're in. Remember you are exploring a limited set of genomes, though.

The numbers in the domain annotation pages will be more accurate, and there will not be many protein fragments corresponding to the same gene in the architecture query results.

If you use SMART to explore domain architectures, or want to find exact domain counts in various genomes, consider switching to Genomic mode. The protein database in Normal SMART has significant redundancy, even though identical proteins are removed. The complete list of genomes in Genomic SMART is available here. In Genomic SMART, only the proteomes of completely sequenced genomes are used Ensembl for metazoans and Swiss-Prot for the rest. This way you don't have to write code to search the database for certain items, the functions do it for you and they are already written. So you could ask for section 'Data20', key 'Name', and you would get the 20th name in the database (config file). In Normal SMART, the database contains Swiss-Prot, SP-TrEMBL and stable Ensembl proteomes. To read a certain piece of data, just supply the section name and the key name. You can use SMART in two different modes: normal or genomic.The main difference is in the underlying protein database used.

Labelview 2015 search database